If you’re on the lookout for a fall favorite that combines indulgence with nourishment, you have to try this Healthy Gluten-Free Pumpkin Muffins with Streusel Topping Recipe. These muffins are the perfect blend of moist pumpkin goodness and a crunchy, cinnamon-kissed streusel that delivers both comfort and health benefits. Made with wholesome ingredients and naturally sweetened with coconut sugar and maple syrup, they bring the joy of pumpkin spice season straight to your kitchen without any gluten worries.

Ingredients You’ll Need
Gathering the right ingredients is so simple for this recipe, yet each one plays a key role in creating the tender texture, warm flavors, and vibrant color that make these muffins truly special.
- 2 cups gluten-free flour (1-to-1 blend): The foundation that keeps these muffins fluffy and light without gluten.
- ¾ cup coconut sugar: Adds natural sweetness and subtle caramel notes, complementing the pumpkin’s earthiness.
- 1 tsp baking soda: The leavening agent that helps your muffins rise perfectly.
- 1 ½ tsp pumpkin pie spice: A warming blend of cinnamon, nutmeg, and cloves to infuse that classic autumn flavor.
- ½ tsp salt: Balances sweetness and enhances all the cozy spices.
- ¾ cup pumpkin puree: Either homemade or canned, this gives the muffins moisture and that beautiful orange hue.
- 1 large egg (whisked): Binds ingredients together and adds richness.
- â…“ cup coconut oil (melted): A healthy fat that keeps muffins moist with a subtle tropical hint.
- â…“ cup pure maple syrup: Adds natural sweetness and a lovely depth of flavor.
- ½ cup milk (cashew or almond): Keeps everything smooth and tender while being dairy-free.
- 1 ½ tsp vanilla extract: Brings a fragrant, sweet aroma that rounds out the flavors.
- For the streusel topping:
- â…“ cup gluten-free flour: Forms the crumbly texture of the topping.
- 2 Tbsp softened butter: Provides richness and helps create that irresistible crunch.
- 2 Tbsp coconut sugar: Adds a golden sweetness and a slight crunch.
- ½ tsp cinnamon: Warms up the topping with a hint of spice that pairs beautifully with pumpkin.
How to Make Healthy Gluten-Free Pumpkin Muffins with Streusel Topping Recipe
Step 1: Prepare your oven and dry ingredients
Start by preheating your oven to 350 degrees Fahrenheit. This ensures it’s nice and hot when your muffins go in. In a large bowl, whisk together the gluten-free flour, coconut sugar, baking soda, pumpkin pie spice, and salt. Mixing these dry ingredients first helps distribute the leavening and spices evenly for a perfectly baked muffin.
Step 2: Mix the wet ingredients
In a separate bowl, combine the pumpkin puree, whisked egg, melted coconut oil, maple syrup, milk, and vanilla extract. Whisking these together until smooth means you’ll get a silky batter that bakes up moist and tender. Watching these come together is so satisfying—it’s like creating a sweet little pumpkin hug.
Step 3: Combine wet and dry ingredients
Now slowly add the dry mixture to the wet ingredients, stirring well after each addition. This gradual mixing avoids overworking the batter, which keeps your muffins light and fluffy—nobody wants a dense muffin! Once combined, your batter will be thick, beautifully spiced, and ready for the next step.
Step 4: Make the streusel topping
For the topping, mix together gluten-free flour, softened butter, coconut sugar, and cinnamon in a medium bowl. Using a fork or pastry cutter, blend these together until you get coarse crumbs. This crumbly mixture is what gives your muffins that delightful crispy-sweet contrast against the soft pumpkin base.
Step 5: Fill muffin tins and add topping
Line a 12-count muffin tray with cupcake liners and lightly spray them with non-stick cooking spray. Fill each liner about ⅓ full with batter—almost to the top but leaving room for rising. Then sprinkle a generous amount of streusel on each muffin. This is the moment your kitchen starts smelling like pumpkin paradise.
Step 6: Bake to perfection
Pop the tray into your preheated oven and bake for 24 to 26 minutes. You’ll know they’re done when a toothpick inserted into the center of a muffin comes out clean. The muffins will have a gorgeous golden color and the streusel topping will be crisp and slightly caramelized. Let them cool completely on a wire rack before serving.
How to Serve Healthy Gluten-Free Pumpkin Muffins with Streusel Topping Recipe
Garnishes
While these muffins are amazing on their own, adding a light dusting of powdered sugar or a drizzle of maple glaze can elevate them to bakery-level treats. A sprinkle of chopped pecans or walnuts adds crunch and a nutty contrast that’s simply divine.
Side Dishes
Pair your muffins with a warm cup of chai tea or pumpkin-spiced coffee for ultimate fall coziness. For a brunch spread, they’re fantastic alongside fresh fruit or a dairy-free yogurt parfait sprinkled with granola for a balanced and satisfying breakfast.
Creative Ways to Present
Turn these Healthy Gluten-Free Pumpkin Muffins with Streusel Topping Recipe into a delightful gift by wrapping a few in parchment paper tied with twine. Or serve them on a rustic wooden board alongside cinnamon sticks and fresh autumn leaves to really capture the seasonal feel at your next gathering.
Make Ahead and Storage
Storing Leftovers
Once completely cooled, store your muffins in an airtight container at room temperature for up to 3 days. They stay moist and flavorful, making it easy to enjoy a quick breakfast or snack any time.
Freezing
If you want to keep these muffins on hand for longer, they freeze beautifully. Wrap each muffin individually in plastic wrap, then place them in a freezer-safe bag. They’ll last up to 3 months and thaw quickly for an easy, healthy treat whenever you need one.
Reheating
To bring back that just-baked taste, gently warm frozen or refrigerated muffins in the microwave for about 20 seconds or in a toaster oven for a few minutes. The streusel topping stays crisp, and the pumpkin flavor shines through with every bite.
FAQs
Can I substitute the coconut sugar with regular sugar?
Yes, you can use regular granulated sugar if you prefer, but coconut sugar adds a subtle caramel flavor that enhances the pumpkin. For a healthier twist, sticking with coconut sugar is ideal.
Is this recipe suitable for vegans?
This recipe includes an egg and butter in the streusel topping. To make it vegan, try flaxseed eggs as a substitute, and swap the butter for a vegan margarine or coconut oil.
Can I make these muffins without the streusel topping?
Absolutely! The streusel adds a lovely crunch, but the muffins are delicious on their own. You can also experiment with other toppings like chopped nuts or a simple dusting of cinnamon sugar.
What kind of gluten-free flour is best?
Using a 1-to-1 gluten-free flour blend ensures the best texture and rise. Avoid using single-ingredient flours alone, as blends with xanthan gum or other binders work best for muffins.
Can I use canned pumpkin puree?
Definitely. Canned pumpkin puree works perfectly and offers consistent moisture and flavor. Just make sure it’s pure pumpkin and not pumpkin pie filling, which has added sugars and spices.
Final Thoughts
Whipping up this Healthy Gluten-Free Pumpkin Muffins with Streusel Topping Recipe is one of those feel-good kitchen moments that fill your home with warmth and joy. Whether you’re enjoying them for breakfast, a snack, or sharing with friends, these muffins bring the essence of pumpkin spice season without any complicated fuss. Trust me, once you try them, you’ll be reaching for the recipe again and again!
Print
Healthy Gluten-Free Pumpkin Muffins with Streusel Topping Recipe
- Prep Time: 10 minutes
- Cook Time: 25 minutes
- Total Time: 35 minutes
- Yield: 12 muffins
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
- Diet: Gluten Free
Description
These Healthy Pumpkin Muffins are a gluten-free treat packed with warm pumpkin pie spices and a sweet coconut sugar streusel topping. Perfect for fall or any time you crave a moist, flavorful muffin that’s both wholesome and indulgent.
Ingredients
Muffin Batter
- 2 cups gluten-free 1-to-1 flour
- ¾ cup coconut sugar
- 1 tsp baking soda
- 1 ½ tsp pumpkin pie spice
- ½ tsp salt
- ¾ cup pumpkin puree (homemade or canned)
- 1 large egg (whisked)
- â…“ cup coconut oil (melted)
- â…“ cup pure maple syrup (room temperature)
- ½ cup milk (cashew or almond milk)
- 1 ½ tsp vanilla extract
Streusel Topping
- â…“ cup gluten-free 1-to-1 flour
- 2 Tbsp butter (softened, almost melted)
- 2 Tbsp coconut sugar
- ½ tsp cinnamon
Instructions
- Preheat the Oven: Set your oven to 350°F (175°C) to warm up while preparing the batter.
- Mix Dry Ingredients: In a large bowl, combine the gluten-free flour, coconut sugar, baking soda, pumpkin pie spice, and salt. Whisk these together until everything is evenly mixed.
- Mix Wet Ingredients: In a separate bowl, whisk together the pumpkin puree, egg, melted coconut oil, maple syrup, nut milk, and vanilla extract until well blended.
- Combine Mixtures: Gradually add the dry ingredients into the wet ingredients, mixing well after each addition. Continue until the batter is smooth and fully combined.
- Prepare Streusel Topping: In a medium bowl, blend gluten-free flour, softened butter, coconut sugar, and cinnamon. Use a fork or pastry cutter to mix until it forms coarse crumbs.
- Fill Muffin Tray: Line a 12-cup muffin tin with liners and lightly spray with non-stick spray. Spoon approximately â…“ cup of batter into each muffin cup, filling almost to the top. Evenly sprinkle the streusel topping over each muffin.
- Bake: Place the muffin tray in the preheated oven and bake for 24-26 minutes. Check doneness by inserting a toothpick into the center; it should come out clean.
- Cool and Serve: Allow the muffins to cool to room temperature before serving. Enjoy the moist texture with a sweet, crunchy topping!
Notes
- Ensure to use a 1-to-1 gluten-free flour blend for best results.
- Milk alternatives like cashew or almond milk work well; avoid using regular dairy for a dairy-free option.
- Measure coconut sugar accurately to maintain the right sweetness balance.
- You can substitute pumpkin pie spice with a mix of cinnamon, nutmeg, and cloves if unavailable.
- Store muffins in an airtight container at room temperature for up to 3 days or refrigerate for up to a week.
- For an extra touch, add chopped nuts or chocolate chips to the batter before baking.

